Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U A activity (calab.CaDeconResult attribute), [1] (calab.DeconvolutionResult attribute), [1] alpha (calab.CellGroundTruth attribute) (calab.SolveTraceResult attribute), [1] alpha_cv (calab.SimulationConfig attribute) alpha_mean (calab.SimulationConfig attribute) alphas (calab.CaDeconResult attribute), [1] amplitude_cv (calab.PhotobleachingConfig attribute) (calab.SinusoidalDrift attribute) amplitude_fraction (calab.PhotobleachingConfig attribute) (calab.SinusoidalDrift attribute) aspect_ratio (calab.DeconConfig attribute) autorun (calab.DeconConfig attribute) B bandpass_filter() (in module calab) baseline (calab.DeconvolutionResult attribute), [1] (calab.SolveTraceResult attribute), [1] baselines (calab.CaDeconResult attribute), [1] beta (calab.BiexpFitResult attribute), [1] beta_fast (calab.BiexpFitResult attribute), [1] BiexpFitResult (class in calab) build_kernel() (in module calab) C CaDeconResult (class in calab) calab module CellGroundTruth (class in calab) clean() (calab.presets static method) clean_calcium (calab.CellGroundTruth attribute) close() (calab.HeadlessBrowser method) compute_lipschitz() (in module calab) compute_upsample_factor() (in module calab) config (calab.SimulationResult attribute) converged (calab.DeconvolutionResult attribute), [1] (calab.SolveTraceResult attribute), [1] convergence_tol (calab.DeconConfig attribute) cycles_max (calab.SinusoidalDrift attribute) cycles_min (calab.SinusoidalDrift attribute) D decay_time_constant_s (calab.PhotobleachingConfig attribute) decon() (in module calab) DeconConfig (class in calab) DeconvolutionResult (class in calab) deconvolve_from_export() (in module calab) drift (calab.SimulationConfig attribute) DriftModel (in module calab) E enabled (calab.PhotobleachingConfig attribute) (calab.SaturationConfig attribute) estimate_kernel() (in module calab) F fit_biexponential() (in module calab) fs (calab.CaDeconResult attribute), [1] fs_hz (calab.SimulationConfig attribute) G gcamp6f() (calab.presets static method) gcamp6m() (calab.presets static method) gcamp6s() (calab.presets static method) ground_truth (calab.SimulationResult attribute) H HeadlessBrowser (class in calab) hill_coefficient (calab.SaturationConfig attribute) hp_filter_enabled (calab.DeconConfig attribute) I is_alive (calab.HeadlessBrowser property) iterations (calab.DeconvolutionResult attribute), [1] (calab.SolveTraceResult attribute), [1] J jgcamp8f() (calab.presets static method) K k_d (calab.SaturationConfig attribute) k_d_cv (calab.SaturationConfig attribute) kernel (calab.SimulationConfig attribute) kernel_fast (calab.CaDeconResult attribute), [1] kernel_slow (calab.CaDeconResult attribute), [1] KernelConfig (class in calab) L load_caiman() (in module calab) load_export_params() (in module calab) load_minian() (in module calab) load_tuning_data() (in module calab) lp_filter_enabled (calab.DeconConfig attribute) M MarkovConfig (class in calab) max_iterations (calab.DeconConfig attribute) mean_reversion (calab.RandomWalkDrift attribute) metadata (calab.CaDeconResult attribute), [1] model_config (calab.CellGroundTruth attribute) (calab.SimulationResult attribute) model_type (calab.MarkovConfig attribute) (calab.PoissonConfig attribute) (calab.RandomWalkDrift attribute) (calab.SinusoidalDrift attribute) module calab N navigate() (calab.HeadlessBrowser method) noise (calab.SimulationConfig attribute) NoiseConfig (class in calab) num_cells (calab.SimulationConfig attribute) num_subsets (calab.DeconConfig attribute) num_timepoints (calab.SimulationConfig attribute) O ogb1() (calab.presets static method) P p_active_to_silent (calab.MarkovConfig attribute) p_silent_to_active (calab.MarkovConfig attribute) p_silent_to_active_cv (calab.MarkovConfig attribute) p_spike_when_active (calab.MarkovConfig attribute) p_spike_when_silent (calab.MarkovConfig attribute) page (calab.HeadlessBrowser property) photobleaching (calab.SimulationConfig attribute) PhotobleachingConfig (class in calab) PoissonConfig (class in calab) presets (class in calab) pve (calab.SolveTraceResult attribute), [1] pves (calab.CaDeconResult attribute), [1] R RandomWalkDrift (class in calab) rate_hz (calab.PoissonConfig attribute) reconvolution (calab.DeconvolutionResult attribute), [1] residual (calab.BiexpFitResult attribute), [1] run_deconvolution() (in module calab) run_deconvolution_full() (in module calab) S s_counts (calab.SolveTraceResult attribute), [1] saturation (calab.SimulationConfig attribute) SaturationConfig (class in calab) save_for_tuning() (in module calab) seed (calab.DeconConfig attribute) (calab.SimulationConfig attribute) shot_noise_enabled (calab.NoiseConfig attribute) shot_noise_fraction (calab.NoiseConfig attribute) simulate() (in module calab) SimulationConfig (class in calab) SimulationResult (class in calab) SinusoidalDrift (class in calab) snr (calab.CellGroundTruth attribute) (calab.NoiseConfig attribute) snr_spread (calab.NoiseConfig attribute) solve_trace() (in module calab) SolveTraceResult (class in calab) spike_model (calab.SimulationConfig attribute) spike_sim_hz (calab.SimulationConfig attribute) SpikeModel (in module calab) spikes (calab.CellGroundTruth attribute) start() (calab.HeadlessBrowser method) step_std_cv (calab.RandomWalkDrift attribute) step_std_fraction (calab.RandomWalkDrift attribute) T target_coverage (calab.DeconConfig attribute) tau_decay (calab.BiexpFitResult attribute), [1] tau_decay_cv (calab.KernelConfig attribute) tau_decay_fast (calab.BiexpFitResult attribute), [1] tau_decay_s (calab.CellGroundTruth attribute) (calab.KernelConfig attribute) tau_rise (calab.BiexpFitResult attribute), [1] tau_rise_cv (calab.KernelConfig attribute) tau_rise_fast (calab.BiexpFitResult attribute), [1] tau_rise_s (calab.CellGroundTruth attribute) (calab.KernelConfig attribute) tau_to_ar2() (in module calab) threshold (calab.SolveTraceResult attribute), [1] traces (calab.SimulationResult attribute) tune() (in module calab) U upsample_target (calab.DeconConfig attribute)